PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 489543
Common NameARALYDRAFT_489543
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 286aa    MW: 31506.4 Da    PI: 9.82
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
489543genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-0578100123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              y+C+ C+k Fs++  L  H++ H
   489543  78 YTCHFCKKGFSTSQALGGHQNAH 100
              9*******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.13E-775105No hitNo description
Gene3DG3DSA:3.30.160.603.4E-576104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.82278105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MSSSSSSTPT PKSKKLKGIV VAMEKSKEKA TRSTNLKLGS PQEVTSERRF ENSSFGSSAV  60
RRGREIMKFY PSKSNKIYTC HFCKKGFSTS QALGGHQNAH KQEREWDKKR KEMQADYPGL  120
AFFNPYLDKP HILLGGYSQD ALSNENHLGI TLDPFKRLIY PSFKSGVIGG IADMNVAVVP  180
RVTPTRFFTG NTSTNGSASR VPNPLPSYNN LYPLNSRNVL PFPPFQTTKL SSNLVSQGNG  240
LSEENFISKI GTKNNIVEID DDDDDDIQPE EEKTKSGGID LSLSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0073990.0AC007399.1 Arabidopsis thaliana BAC F14I23 from chromosome V near 69 cM, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874341.10.0zinc finger family protein
TrEMBLD7M5G80.0D7M5G8_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.6__2677__AT5G27880.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.11e-156C2H2 family protein